Bioconductor Network analysis

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wgcna network analysis network correlation coexpression

updated 5.0 years ago by Lluís Revilla Sancho ▴ 760 • written 9.3 years ago by jol.espinoz ▴ 40

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1.6k

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EGAD_1.16.0 EGAD R network analysis

updated 3.8 years ago by Andrés • 0 • written 5.4 years ago by m4rc.b3ringer • 0

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wgcna network analysis

5.8 years ago jwilliamblamer • 0

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1.5k

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bioinformatician job bioinformatics scientist cancer genomics biostatistics network analysis Job

7.1 years ago marschaefer • 0

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WGCNA network analysis Sign

8.3 years ago • updated 7.6 years ago aurora.savino ▴ 10

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LRT co-expression network deseq2 time course experiment network analysis

updated 2.6 years ago by Jennifer Dehner • 0 • written 7.8 years ago by aishu.jp ▴ 30

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wgcna network analysis pathway analysis

8.5 years ago panagiotis.mokos ▴ 40

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WGCNA rcytoscape network analysis

updated 9.5 years ago by Paul Shannon ▴ 470 • written 9.5 years ago by christopher.clarskon15 ▴ 20

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ppi network analysis igraph

9.6 years ago Abhishek Pratap ▴ 190

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1.5k

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systemsbiology network analysis drugvsdisease Job

9.6 years ago jing.tang • 0

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1.9k

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postdoc bioinformatics network analysis australia systemsbiology Job

9.6 years ago david.lynn • 0

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3.8k

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network analysis

updated 10.3 years ago by remy.c.nicolle ▴ 10 • written 10.3 years ago by Aaerp ▴ 40

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BioNet bioconductor affymetrixchip network analysis

10.8 years ago svlachavas ▴ 840

13 results • Page 1 of 1

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180